Researchers can follow the lives of microplankton at the individual level for the first time by making use of holograms created in digital microscopes and interpreted using artificial intelligence (AI).

The method is the result of an interdisciplinary research project at the University of Gothenburg.

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Source: Harshith Bachimanchi

An illustration of microplankton in a solution. The round rings under the microplankton are the holograms formed when light is refracted by the microplankton.

“Until now I had to study microplankton at the group level, but thanks to this new AI based holographic microscope I can see how individual microplanktons move, eat, grow and reproduce,” said Erik Selander, marine biologist at the University of Gothenburg.

He had heard Giovanni Volpe, Professor in Physics at the University, speak at a conference in 2019 about a new technique in which light refracted through a particle creates a hologram that can be studied instead of the particle.

Using AI, the holograms can be analysed at much higher speeds, providing more and finer details. Selander and Volpe then started an interdisciplinary project that targeted microplankton.

“We have a good understanding of who eats who, and where they go in the case of larger organisms such as animals and birds that we see every day. The method we have developed is the only one that works to study microscopic organisms at the individual level,” said Giovanni Volpe.

The method

The method uses LED light to analyse microplankton in holographic microscopes and this ensures that the organisms remain unaffected during the process. This discovery has been reported in an article in the journal eLife.

“The microplankton cells we examine are only a few hundredths of a millimetre in size. But they are so numerous that they affect the entire carbon cycle of the ocean. In total, single cell microplankton take up about three times as much carbon as we humans emit from fossil fuels. Now we are able to get a detailed understanding of these processes at the individual level,” said Erik Selander.

The method of recording light-matter interaction through digital cameras with the help of a holographic microscope has been well studied in the past. But thanks to digital technology and the recent AI revolution, this method has become far more useful and the analysis is easier and much faster.

“By combining holographic microscopy with AI, now we can simultaneously monitor what is happening with a large collection of microplankton cells at a single cell-level, which was a challenge before. Though the technique is demonstrated with marine microorganisms, it is quite universal in approach and can be applied to any microscopic lifeform.

”And by enclosing the cells in miniatured glass wells, we can follow the growth dynamics and swimming behaviours of cells, throughout their life cycle from hours to days,” said Harshith Bachimanchi, doctoral student in physics at the University of Gothenburg.

Holographic microscopy also offers a fast and inexpensive method for counting, weighing and sizing cells, or other particles, in a solution.